Files in LUMC/dgeAnalysis

dgeAnalysis

CHANGELOG.md MANUAL.pdf R/de_functions.R R/enrichment.R R/markdown.R R/plot_prep.R R/plots.R R/shiny.R README.md inst/app.R inst/src/lib/libraries.R inst/src/markdown/analysisDESeq2.Rmd inst/src/markdown/analysisEdgeR.Rmd inst/src/markdown/analysisLimma.Rmd inst/src/markdown/enrichmentGProfiler2.Rmd inst/src/server.R inst/src/tabs/about/svr_about.R inst/src/tabs/about/ui_about.R inst/src/tabs/alignment/svr_alignment.R inst/src/tabs/alignment/ui_alignment.R inst/src/tabs/analysis/svr_analysis.R inst/src/tabs/analysis/ui_analysis.R inst/src/tabs/bias/svr_bias.R inst/src/tabs/bias/ui_bias.R inst/src/tabs/dimension/svr_dimension.R inst/src/tabs/dimension/ui_dimension.R inst/src/tabs/export/svr_export.R inst/src/tabs/export/ui_export.R inst/src/tabs/gprofiler/svr_gprofiler.R inst/src/tabs/gprofiler/ui_gprofiler.R inst/src/tabs/heatmaps/svr_heatmaps.R inst/src/tabs/heatmaps/ui_heatmaps.R inst/src/tabs/home/svr_home.R inst/src/tabs/home/ui_home.R inst/src/tabs/norm_data/svr_norm.R inst/src/tabs/norm_data/ui_norm.R inst/src/tabs/raw_data/svr_raw.R inst/src/tabs/raw_data/ui_raw.R inst/src/tabs/run_analysis/svr_run.R inst/src/tabs/run_analysis/ui_run.R inst/src/tabs/run_gprofiler/svr_enrich.R inst/src/tabs/run_gprofiler/ui_enrich.R inst/src/tabs/upload/svr_upload.R inst/src/tabs/upload/ui_upload.R inst/src/ui.R man/addAnnotationsFromTableToSE.Rd man/addSamplesFromTableToSE.Rd man/alignment_summary.Rd man/bar_plot.Rd man/barcode.Rd man/barcode_plot.Rd man/bias_gc.Rd man/cnetPlotly.Rd man/cnet_data.Rd man/complexity.Rd man/complexityData.Rd man/count_dist.Rd man/createContrast.Rd man/createDesign.Rd man/createMatrix.Rd man/de_ratio.Rd man/dendro_data.Rd man/dendro_plot.Rd man/enrich_bar.Rd man/enrich_barDE.Rd man/extract_geneSets.Rd man/fix_violin_hover.Rd man/gene_strand.Rd man/getCount.Rd man/get_dendrogram_data.Rd man/get_organismID.Rd man/heat_de.Rd man/heat_var.Rd man/heatmap_plot.Rd man/informationBox.Rd man/line_plot.Rd man/list2df.Rd man/list2graph.Rd man/ma.Rd man/mds_clust.Rd man/network_plot.Rd man/pca_data.Rd man/pvalue_data.Rd man/readCountsFromTable.Rd man/relevelSamples.Rd man/scatter_plot.Rd man/stackDge.Rd man/startApp.Rd man/tsne_data.Rd man/violin_dist.Rd man/violin_plot.Rd man/volcano.Rd man/voom_data.Rd