Files in LUMC/dgeAnalysis
dgeAnalysis
.gitignore
CHANGELOG.md
DESCRIPTION
LICENSE
MANUAL.pdf
NAMESPACE
R/de_functions.R
R/enrichment.R
R/markdown.R
R/plot_prep.R
R/plots.R
R/shiny.R
README.md
docker/Dockerfile
exampleData/exampleData.zip
inst/app.R
inst/src/css/styles.css
inst/src/lib/libraries.R
inst/src/markdown/analysisDESeq2.Rmd
inst/src/markdown/analysisEdgeR.Rmd
inst/src/markdown/analysisLimma.Rmd
inst/src/markdown/enrichmentGProfiler2.Rmd
inst/src/server.R
inst/src/tabs/about/svr_about.R
inst/src/tabs/about/ui_about.R
inst/src/tabs/alignment/svr_alignment.R
inst/src/tabs/alignment/ui_alignment.R
inst/src/tabs/analysis/svr_analysis.R
inst/src/tabs/analysis/ui_analysis.R
inst/src/tabs/bias/svr_bias.R
inst/src/tabs/bias/ui_bias.R
inst/src/tabs/dimension/svr_dimension.R
inst/src/tabs/dimension/ui_dimension.R
inst/src/tabs/export/svr_export.R
inst/src/tabs/export/ui_export.R
inst/src/tabs/gprofiler/svr_gprofiler.R
inst/src/tabs/gprofiler/ui_gprofiler.R
inst/src/tabs/heatmaps/svr_heatmaps.R
inst/src/tabs/heatmaps/ui_heatmaps.R
inst/src/tabs/home/svr_home.R
inst/src/tabs/home/ui_home.R
inst/src/tabs/norm_data/svr_norm.R
inst/src/tabs/norm_data/ui_norm.R
inst/src/tabs/raw_data/svr_raw.R
inst/src/tabs/raw_data/ui_raw.R
inst/src/tabs/run_analysis/svr_run.R
inst/src/tabs/run_analysis/ui_run.R
inst/src/tabs/run_gprofiler/svr_enrich.R
inst/src/tabs/run_gprofiler/ui_enrich.R
inst/src/tabs/upload/svr_upload.R
inst/src/tabs/upload/ui_upload.R
inst/src/ui.R
inst/src/www/loading.gif
inst/src/www/lumcFavicon.png
inst/src/www/lumcLogo.png
inst/src/www/programFlow.png
man/addAnnotationsFromTableToSE.Rd
man/addSamplesFromTableToSE.Rd
man/alignment_summary.Rd
man/bar_plot.Rd
man/barcode.Rd
man/barcode_plot.Rd
man/bias_gc.Rd
man/cnetPlotly.Rd
man/cnet_data.Rd
man/complexity.Rd
man/complexityData.Rd
man/count_dist.Rd
man/createContrast.Rd
man/createDesign.Rd
man/createMatrix.Rd
man/de_ratio.Rd
man/dendro_data.Rd
man/dendro_plot.Rd
man/enrich_bar.Rd
man/enrich_barDE.Rd
man/extract_geneSets.Rd
man/fix_violin_hover.Rd
man/gene_strand.Rd
man/getCount.Rd
man/get_dendrogram_data.Rd
man/get_organismID.Rd
man/heat_de.Rd
man/heat_var.Rd
man/heatmap_plot.Rd
man/informationBox.Rd
man/line_plot.Rd
man/list2df.Rd
man/list2graph.Rd
man/ma.Rd
man/mds_clust.Rd
man/network_plot.Rd
man/pca_data.Rd
man/pvalue_data.Rd
man/readCountsFromTable.Rd
man/relevelSamples.Rd
man/scatter_plot.Rd
man/stackDge.Rd
man/startApp.Rd
man/tsne_data.Rd
man/violin_dist.Rd
man/violin_plot.Rd
man/volcano.Rd
man/voom_data.Rd
