cnetPlotly: Genes are gathered from enrichment result from specific...
In LUMC/dgeAnalysis: dgeAnalysis
cnetPlotly R Documentation
Genes are gathered from enrichment result from specific pathway.
The geneList is prepared with the right LogFC values and links of genes between multiple pathways.
The number of pathways that are shown is defined with cnet_slider.
Igraph object is made to create links of genes between multiple pathways.
Colors of dots are based on LogFC.
Description
Genes are gathered from enrichment result from specific pathway.
The geneList is prepared with the right LogFC values and links of genes between multiple pathways.
The number of pathways that are shown is defined with cnet_slider.
Igraph object is made to create links of genes between multiple pathways.
Colors of dots are based on LogFC.
Usage
cnetPlotly(enrich, geneSets, deTab)
Arguments
enrich
Enrich result, A enrichment results
geneSets
Martrix object, containing all pathways with corresponding genes
deTab
Dataframe, with all analysis results
Value
g, (Igraph object) containing links of genes multiple pathways
LUMC/dgeAnalysis documentation built on Aug. 16, 2022, 6:23 a.m.
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| cnetPlotly | R Documentation |
Genes are gathered from enrichment result from specific pathway. The geneList is prepared with the right LogFC values and links of genes between multiple pathways. The number of pathways that are shown is defined with cnet_slider. Igraph object is made to create links of genes between multiple pathways. Colors of dots are based on LogFC.
Description
Genes are gathered from enrichment result from specific pathway. The geneList is prepared with the right LogFC values and links of genes between multiple pathways. The number of pathways that are shown is defined with cnet_slider. Igraph object is made to create links of genes between multiple pathways. Colors of dots are based on LogFC.
Usage
cnetPlotly(enrich, geneSets, deTab)
Arguments
enrich |
Enrich result, A enrichment results |
geneSets |
Martrix object, containing all pathways with corresponding genes |
deTab |
Dataframe, with all analysis results |
Value
g, (Igraph object) containing links of genes multiple pathways
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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