extract_geneSets: Collect genes within a pathway. Gets genes from enrichment...

View source: R/enrichment.R

extract_geneSetsR Documentation

Collect genes within a pathway. Gets genes from enrichment result. Gene names are retrieved from terms duplicated pathways are removed from the set.

Description

Collect genes within a pathway. Gets genes from enrichment result. Gene names are retrieved from terms duplicated pathways are removed from the set.

Usage

extract_geneSets(enrich, slider, selected)

Arguments

enrich

Enrichment object, containing enrichment results

slider

Integer, Updated number of pathways to show

selected

Vector, Contains manually selected pathways

Value

geneSets, (vector) Genes found in corresponding pathways


LUMC/dgeAnalysis documentation built on Aug. 16, 2022, 6:23 a.m.