extract_geneSets: Collect genes within a pathway. Gets genes from enrichment...
In LUMC/dgeAnalysis: dgeAnalysis
extract_geneSets R Documentation
Collect genes within a pathway.
Gets genes from enrichment result.
Gene names are retrieved from terms
duplicated pathways are removed from the set.
Description
Collect genes within a pathway.
Gets genes from enrichment result.
Gene names are retrieved from terms
duplicated pathways are removed from the set.
Usage
extract_geneSets(enrich, slider, selected)
Arguments
enrich
Enrichment object, containing enrichment results
slider
Integer, Updated number of pathways to show
selected
Vector, Contains manually selected pathways
Value
geneSets, (vector) Genes found in corresponding pathways
LUMC/dgeAnalysis documentation built on Aug. 16, 2022, 6:23 a.m.
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| extract_geneSets | R Documentation |
Collect genes within a pathway. Gets genes from enrichment result. Gene names are retrieved from terms duplicated pathways are removed from the set.
Description
Collect genes within a pathway. Gets genes from enrichment result. Gene names are retrieved from terms duplicated pathways are removed from the set.
Usage
extract_geneSets(enrich, slider, selected)
Arguments
enrich |
Enrichment object, containing enrichment results |
slider |
Integer, Updated number of pathways to show |
selected |
Vector, Contains manually selected pathways |
Value
geneSets, (vector) Genes found in corresponding pathways
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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