get_all_variants: A tools4ukbb function Function output: a dataframe with three...
In Lab-Jaiswal/tools4ukbb: What the Package Does (One Line, Title Case)
get_all_variants R Documentation
A tools4ukbb function
Function output: a dataframe with three columns: variants, chromosome, and index, which, respectfully indicate the name of the variant, the chromosome they are on, and their index (per chromosome).
Description
A tools4ukbb function
Function output: a dataframe with three columns: variants, chromosome, and index, which, respectfully indicate the name of the variant, the chromosome they are on, and their index (per chromosome).
Usage
get_all_variants(pattern, directory, variants)
Arguments
pattern
the pattern by which you are labeling your chromosomes (eg: for files of pattern sample3_chr2_date.pvar, chromsome = "chr" OR for s1_c2_date.pvar, chromosome = "c")
directory
the directory with your pvar, pgen, and psam files
variants
a list of variants you are interested in
Examples
get_all_variants()
Lab-Jaiswal/tools4ukbb documentation built on May 12, 2022, 9:11 a.m.
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| get_all_variants | R Documentation |
A tools4ukbb function Function output: a dataframe with three columns: variants, chromosome, and index, which, respectfully indicate the name of the variant, the chromosome they are on, and their index (per chromosome).
Description
A tools4ukbb function Function output: a dataframe with three columns: variants, chromosome, and index, which, respectfully indicate the name of the variant, the chromosome they are on, and their index (per chromosome).
Usage
get_all_variants(pattern, directory, variants)
Arguments
pattern |
the pattern by which you are labeling your chromosomes (eg: for files of pattern sample3_chr2_date.pvar, chromsome = "chr" OR for s1_c2_date.pvar, chromosome = "c") |
directory |
the directory with your pvar, pgen, and psam files |
variants |
a list of variants you are interested in |
Examples
get_all_variants()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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