get_chromosome_list: A tools4ukbb function Function output: a list of all of the...
In Lab-Jaiswal/tools4ukbb: What the Package Does (One Line, Title Case)
View source: R/get_chromosome_list.R
get_chromosome_list R Documentation
A tools4ukbb function
Function output: a list of all of the files in your directory for which you have pvar and pgen pairs
The chromosome pattern MUST be inbetween two underscores in your file name (ex: S2_chr2_date.pvar or S2_c2_date.pvar)
Description
A tools4ukbb function
Function output: a list of all of the files in your directory for which you have pvar and pgen pairs
The chromosome pattern MUST be inbetween two underscores in your file name (ex: S2_chr2_date.pvar or S2_c2_date.pvar)
Usage
get_chromosome_list(pattern, directory)
Arguments
pattern
the pattern by which you are labeling your chromosomes (eg: for files of pattern sample3_chr2_date.pvar, chromsome = "chr" OR for s1_c2_date.pvar, chromosome = "c")
directory
the directory with your pvar, pgen, and psam files
Examples
get_chromosome_list()
Lab-Jaiswal/tools4ukbb documentation built on May 12, 2022, 9:11 a.m.
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View source: R/get_chromosome_list.R
| get_chromosome_list | R Documentation |
A tools4ukbb function Function output: a list of all of the files in your directory for which you have pvar and pgen pairs The chromosome pattern MUST be inbetween two underscores in your file name (ex: S2_chr2_date.pvar or S2_c2_date.pvar)
Description
A tools4ukbb function Function output: a list of all of the files in your directory for which you have pvar and pgen pairs The chromosome pattern MUST be inbetween two underscores in your file name (ex: S2_chr2_date.pvar or S2_c2_date.pvar)
Usage
get_chromosome_list(pattern, directory)
Arguments
pattern |
the pattern by which you are labeling your chromosomes (eg: for files of pattern sample3_chr2_date.pvar, chromsome = "chr" OR for s1_c2_date.pvar, chromosome = "c") |
directory |
the directory with your pvar, pgen, and psam files |
Examples
get_chromosome_list()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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