set_user_data: Sets the data objects as default.
In LauraPS1/TFEA.ChIP: Analyze Transcription Factor Enrichment
View source: R/All-functions.R
set_user_data R Documentation
Sets the data objects as default.
Description
Function to set the data objects provided by the user
as default to the rest of the functions.
Usage
set_user_data(metadata, ChIPDB)
Arguments
metadata
Data frame/matrix/array contaning the following fields:
'Name','Accession','Cell','Cell Type','Treatment','Antibody','TF'.
ChIPDB
List containing two elements:
- Gene Keys: vector of gene IDs
- ChIP Targets: list of vectors, one per ChIP-seq experiment in the,
database, containing the putative targets assigned. Each target is
coded as its position in the vector 'Gene Keys'.
Value
sets the user's metadata table and TFBS matrix as the variables
'MetaData' and 'ChIPDB', used by the rest of the package.
Examples
data( 'MetaData', 'ChIPDB', package='TFEA.ChIP' )
# For this example, we will usethe variables already included in the
# package.
set_user_data( MetaData, ChIPDB )
LauraPS1/TFEA.ChIP documentation built on April 21, 2023, 7:29 a.m.
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View source: R/All-functions.R
| set_user_data | R Documentation |
Sets the data objects as default.
Description
Function to set the data objects provided by the user as default to the rest of the functions.
Usage
set_user_data(metadata, ChIPDB)
Arguments
metadata |
Data frame/matrix/array contaning the following fields: 'Name','Accession','Cell','Cell Type','Treatment','Antibody','TF'. |
ChIPDB |
List containing two elements: - Gene Keys: vector of gene IDs - ChIP Targets: list of vectors, one per ChIP-seq experiment in the, database, containing the putative targets assigned. Each target is coded as its position in the vector 'Gene Keys'. |
Value
sets the user's metadata table and TFBS matrix as the variables 'MetaData' and 'ChIPDB', used by the rest of the package.
Examples
data( 'MetaData', 'ChIPDB', package='TFEA.ChIP' )
# For this example, we will usethe variables already included in the
# package.
set_user_data( MetaData, ChIPDB )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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