Files in LiNk-NY/curatedTCGAManu
Presents example analyses using curatedTCGAData, MultiAssayExperiment, and TCGAutils
.Rbuildignore
.github/workflows/main.yml
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
NAMESPACE
README.Rmd
README.md
_pkgdown.yml
curatedTCGAManu.Rproj
inst/data/ora/BLCA.rds
inst/data/ora/BRCA.rds
inst/data/ora/ESCA.rds
inst/data/ora/HNSC.rds
inst/data/ora/KICH.rds
inst/data/ora/KIRC.rds
inst/data/ora/KIRP.rds
inst/data/ora/LIHC.rds
inst/data/ora/LUAD.rds
inst/data/ora/LUSC.rds
inst/data/ora/PRAD.rds
inst/data/ora/STAD.rds
inst/data/ora/THCA.rds
inst/data/ora/UCEC.rds
inst/data/padog/BLCA.rds
inst/data/padog/BRCA.rds
inst/data/padog/ESCA.rds
inst/data/padog/HNSC.rds
inst/data/padog/KICH.rds
inst/data/padog/KIRC.rds
inst/data/padog/KIRP.rds
inst/data/padog/LIHC.rds
inst/data/padog/LUAD.rds
inst/data/padog/LUSC.rds
inst/data/padog/PRAD.rds
inst/data/padog/STAD.rds
inst/data/padog/THCA.rds
inst/data/padog/UCEC.rds
inst/data/pancan_exprs.rds
inst/extra/GMQL_vignette.Rmd
inst/extra/SCNA.Rmd
inst/extra/eQTL_vignette.Rmd
inst/scripts/Figure1Alt.R
inst/scripts/available_subtypes.R
inst/scripts/data_types_explained.R
inst/scripts/subtypes_comp.R
vignettes/Figure2_OncoPrint.Rmd
vignettes/Figures3n4_GSEA_PanCan.Rmd
vignettes/Figures5-6-S4.Rmd
