Man pages for LieberInstitute/qsvaR
Generate Quality Surrogate Variable Analysis for Degradation Correction
| degradation_tstats | Degradation time t-statistics |
| DEqual | Differential expression quality (DEqual) plot |
| getDegTx | Obtain expression matrix for degraded transcripts |
| getPCs | PCs from transcripts |
| get_qsvs | Generate matrix of qsvs |
| k_qsvs | Apply num.sv algorithm to determine the number of pcs to be... |
| normalize_tx_names | Remove version number from Gencode/Ensembl transcript names |
| qSVA | A wrapper function used to perform qSVA in one step. |
| rse_tx | Example of RSE object with RNA-seq transcript quantification... |
| select_transcripts | Select transcripts associated with degradation |
| transcripts | Transcripts for Degradation Models |
| which_tx_names | Check validity of transcript vectors and return a vector... |
