Man pages for LieberInstitute/qsvaR
Generate Quality Surrogate Variable Analysis for Degradation Correction
| check_tx_names | Check validity of transcript vectors |
| covComb_tx_deg | RSE object of RNA-seq data that serves as output for... |
| degradation_tstats | Degradation time t-statistics |
| DEqual | Differential expression quality (DEqual) plot |
| getDegTx | Obtain expression matrix for degraded transcripts |
| getPCs | PCs from transcripts |
| get_qsvs | Generate matrix of qsvs |
| k_qsvs | Apply num.sv algorithm to determine the number of pcs to be... |
| qSVA | A wrapper function used to perform qSVA in one step. |
| select_transcripts | Select transcripts associated with degradation |
| transcripts | Transcripts for Degradation Models |
