transcripts: Transcripts for Degradation Models
In LieberInstitute/qsvaR: Generate Quality Surrogate Variable Analysis for Degradation Correction
transcripts R Documentation
Transcripts for Degradation Models
Description
This object is a list of four tibbles where each element corresponds to the
top 10,000 transcripts (by significance) and their adjusted p-values for a
given degradation model. The main_model model is a linear model modelling
expression against a sample's degradation time, with brain region as a
covariate. The int_model model is similar but includes an interaction term
with degradation time and brain region. The cell_main_model and
cell_int_model models are like the respective main_model and int_model
models, but including cell-type fractions from deconvolution as linear terms.
Usage
transcripts
Format
A list() of tibble()s containing the transcripts and adjusted
p-values selected by each model.
Each string is a GENCODE transcript IDs.
See Also
select_transcripts
LieberInstitute/qsvaR documentation built on Dec. 14, 2024, 10:30 p.m.
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| transcripts | R Documentation |
Transcripts for Degradation Models
Description
This object is a list of four tibbles where each element corresponds to the
top 10,000 transcripts (by significance) and their adjusted p-values for a
given degradation model. The main_model model is a linear model modelling
expression against a sample's degradation time, with brain region as a
covariate. The int_model model is similar but includes an interaction term
with degradation time and brain region. The cell_main_model and
cell_int_model models are like the respective main_model and int_model
models, but including cell-type fractions from deconvolution as linear terms.
Usage
transcripts
Format
A list() of tibble()s containing the transcripts and adjusted
p-values selected by each model.
Each string is a GENCODE transcript IDs.
See Also
select_transcripts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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