get_qsvs: Generate matrix of qsvs
In LieberInstitute/qsvaR: Generate Quality Surrogate Variable Analysis for Degradation Correction
get_qsvs R Documentation
Generate matrix of qsvs
Description
Using the pcs and the k number of components be included,
we generate the qsva matrix.
Usage
get_qsvs(qsvPCs, k)
Arguments
qsvPCs
prcomp object generated by taking
the pcs of degraded transcripts
k
number of qsvs to be included.
Value
matrix with k principal components for each sample.
Examples
qsv <- getPCs(rse_tx, "tpm")
get_qsvs(qsv, 2)
LieberInstitute/qsvaR documentation built on Dec. 14, 2024, 10:30 p.m.
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| get_qsvs | R Documentation |
Generate matrix of qsvs
Description
Using the pcs and the k number of components be included, we generate the qsva matrix.
Usage
get_qsvs(qsvPCs, k)
Arguments
qsvPCs |
prcomp object generated by taking the pcs of degraded transcripts |
k |
number of qsvs to be included. |
Value
matrix with k principal components for each sample.
Examples
qsv <- getPCs(rse_tx, "tpm")
get_qsvs(qsv, 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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