getPCs: PCs from transcripts
In LieberInstitute/qsvaR: Generate Quality Surrogate Variable Analysis for Degradation Correction
getPCs R Documentation
PCs from transcripts
Description
This function returns the pcs from the obtained RangedSummarizedExperiment object of selected transcripts
Usage
getPCs(rse_tx, assayname = "tpm")
Arguments
rse_tx
Ranged Summarizeed Experiment with only trancsripts selected for qsva
assayname
character string specifying the name of the assay desired in rse_tx
Value
prcomp object generated by taking the pcs of degraded transcripts
Examples
getPCs(covComb_tx_deg, "tpm")
LieberInstitute/qsvaR documentation built on June 22, 2024, 8:03 a.m.
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| getPCs | R Documentation |
PCs from transcripts
Description
This function returns the pcs from the obtained RangedSummarizedExperiment object of selected transcripts
Usage
getPCs(rse_tx, assayname = "tpm")
Arguments
rse_tx |
Ranged Summarizeed Experiment with only trancsripts selected for qsva |
assayname |
character string specifying the name of the assay desired in rse_tx |
Value
prcomp object generated by taking the pcs of degraded transcripts
Examples
getPCs(covComb_tx_deg, "tpm")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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