R/recount.bwtool-package.R

In LieberInstitute/recount.bwtool: Compute coverage matrices from recount quickly using bwtool

#' Compute coverage matrices from recount quickly using bwtool.
#'
#' Compute coverage matrices from recount
#' \url{https://jhubiostatistics.shinyapps.io/recount/} using \code{bwtool}.
#' This makes it easy to explore regions beyond the genes and exons that are
#' available in recount. For example, it can be used for
#' annotation-agnostic differential expression analyses with the data from the
#' recount project as described at
#' \url{http://biorxiv.org/content/early/2016/08/08/068478}.
#'
#' @name recount.bwtool-package
#' @aliases recount.bwtool-package
#' @docType package
#' @author Leonardo Collado-Torres <leo.collado@@libd.org>
#'
#' @keywords package
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