View source: R/prep_stitched_data.R
prep_stitched_data | R Documentation |
Given a SpatialExperiment
built with visiumStitched::build_spe()
http://research.libd.org/visiumStitched/reference/build_spe.html, drop
excluded spots (specified by spe$exclude_overlapping
) and compute an
appropriate spot size for plotting with vis_gene()
or
vis_clus()
, assuming the plot will be written to a PDF of default
dimensions (i.e. width = 7
and height = 7
).
prep_stitched_data(spe, point_size, image_id)
spe |
A |
point_size |
A |
image_id |
A |
A list with names spe
and point_size
containing a
filtered, ready-to-plot SpatialExperiment
and an appropriate spot size
(passed to vis_gene()
or vis_clus()
), respectively
Nicholas J. Eagles
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