tstats_Human_DLPFC_snRNAseq_Nguyen_topLayer: Cell cluster t-statistics from Tran et al

In LieberInstitute/spatialLIBD: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

Cell cluster t-statistics from Tran et al

Description

Using the DLPFC snRNA-seq data from Matthew N Tran et al we computed enrichment t-statistics for the cell clusters. This is a subset of them used in examples such as in layer_stat_cor_plot().

Usage

tstats_Human_DLPFC_snRNAseq_Nguyen_topLayer

Format

A matrix with 692 rows and 31 variables where each column is a given cell cluster from Tran et al and each row is one gene. The row names are Ensembl gene IDs which are used by layer_stat_cor() to match to our modeling results.

Source

https://github.com/LieberInstitute/HumanPilot/blob/master/Analysis/Layer_Guesses/dlpfc_snRNAseq_annotation.R and https://github.com/LieberInstitute/spatialLIBD/blob/master/dev/02_dev.R#L107-L194.

LieberInstitute/spatialLIBD documentation built on April 21, 2024, 6:47 p.m.