ExonPlusUtr.human.GRCh37: Gene model with exon, 5' UTR and 3' UTR information for human...

In LihuaJulieZhu/ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges

Description

Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37) obtained from biomaRt

Usage

ExonPlusUtr.human.GRCh37

Format

GRanges with slot start holding the start position of the exon, slot end holding the end position of the exon, slot rownames holding ensembl transcript id and slot space holding the chromosome location where the gene is located. In addition, the following variables are included.

list("strand")

1 for positive strand and -1 for negative strand

list("description")

description of the transcript

list("ensembl_gene_id")

gene id

list("utr5start")

5' UTR start

list("utr5end")

5' UTR end

list("utr3start")

3' UTR start

list("utr3end")

3' UTR end

Details

used in the examples Annotation data obtained by: mart = useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl") ExonPlusUtr.human.GRCh37 = getAnnotation(mart=human, featureType="ExonPlusUtr")

Examples

data(ExonPlusUtr.human.GRCh37)
slotNames(ExonPlusUtr.human.GRCh37)

LihuaJulieZhu/ChIPpeakAnno documentation built on Aug. 5, 2020, 12:02 a.m.