oligoFrequency: get the oligonucleotide frequency
In LihuaJulieZhu/ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Prepare the oligonucleotide frequency for given Markov order.
Usage
1
oligoFrequency(sequence, MarkovOrder = 3L, last = 1e+06)
Arguments
sequence
The sequences packaged in DNAStringSet, DNAString object or
output of function getAllPeakSequence.
MarkovOrder
Markov order.
last
The sequence size to be analyzed.
Value
A numeric vector.
Author(s)
Jianhong Ou
See Also
See Also as oligoSummary
Examples
1
2
3
library(seqinr)
library(Biostrings)
oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))
LihuaJulieZhu/ChIPpeakAnno documentation built on Aug. 5, 2020, 12:02 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
Prepare the oligonucleotide frequency for given Markov order.
Usage
1 | oligoFrequency(sequence, MarkovOrder = 3L, last = 1e+06)
|
Arguments
sequence |
The sequences packaged in DNAStringSet, DNAString object or output of function getAllPeakSequence. |
MarkovOrder |
Markov order. |
last |
The sequence size to be analyzed. |
Value
A numeric vector.
Author(s)
Jianhong Ou
See Also
See Also as oligoSummary
Examples
1 2 3 | library(seqinr)
library(Biostrings)
oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.