oligoFrequency: get the oligonucleotide frequency

Description Usage Arguments Value Author(s) See Also Examples

View source: R/oligoSummary.R

Description

Prepare the oligonucleotide frequency for given Markov order.

Usage

1
oligoFrequency(sequence, MarkovOrder = 3L, last = 1e+06)

Arguments

sequence

The sequences packaged in DNAStringSet, DNAString object or output of function getAllPeakSequence.

MarkovOrder

Markov order.

last

The sequence size to be analyzed.

Value

A numeric vector.

Author(s)

Jianhong Ou

See Also

See Also as oligoSummary

Examples

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    library(seqinr)
    library(Biostrings)
    oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))

LihuaJulieZhu/ChIPpeakAnno documentation built on Aug. 5, 2020, 12:02 a.m.