Files in LisaHopcroft/CTutils

Helpful Functions for Clinical Trial Data Analysis at SCTRU (Public Health Scotland)

R/CTutilsproject.R R/EUDRACT_functions.R R/RECIST_COMPLETE.R R/RECIST_PARTIAL.R R/RECIST_PROGRESSIVE.R R/UTILITY_error_handling.R R/add_dependency_to_fields.R R/add_total_line.R R/all_files_exist.R R/calculate_BMI.R R/calculate_RECIST_response.R R/calculate_dose_modification.R R/calculate_missing_data.R R/calculate_mode.R R/calculate_number_of_instances.R R/check_all_files_exist.R R/check_extract_date.R R/clinical_trials_functions.R R/create_SSR_structure.R R/create_dummy_data.R R/create_testresult_string.R R/data_definitions.R R/do.R R/do_count.R R/do_count_comparison.R R/do_list_comparison.R R/do_list_extraction.R R/do_summary.R R/expand_dependency_locations_in_glossary.R R/expand_glossary.R R/extract_complex_dependencies.R R/extract_simple_dependencies.R R/find_mode.R R/fit_flextable_to_page.R R/generate_visit_label.R R/initialise_RECIST_VALUES.R R/parse_MACRO_DSD_file.R R/parse_MACRO_DSD_for_glossary_and_dependencies2.R R/patient_journey_functions.R R/plot_attendance_data.R R/plot_missing_data.R R/plot_missing_data_detailed.R R/print_M0M1_flextable.R R/print_data_queries_message.R R/print_error.R R/print_file_loading_info.R R/print_flextable.R R/print_labtests_flextable.R R/print_message.R R/print_signsandsyptoms_flextable.R R/print_warning.R R/read_EudraCT_vocabulary.R R/read_report_YAML.R R/record_data_query.R R/refactor_variables.R R/rejig_panel_dimensions.R R/rejig_panel_widths.R R/replace_func.R R/replace_infinite_numbers.R R/replace_missing_number.R R/replace_missing_string.R R/resolve_individual_filter_statement.R R/save_image.R R/subchunkify.R R/test_fn.R R/tidy_logical_expression.R R/variables_to_incorporate.R README.md inst/resources/10_glossary-extraction.Rmd inst/resources/11_glossary-munge.Rmd inst/resources/12_dependency-build.Rmd inst/resources/20_data-extraction.Rmd inst/resources/21_data-munge.Rmd inst/resources/22_population-definitions.Rmd inst/resources/30_report-information.Rmd inst/resources/40_report-title-page.Rmd inst/resources/41a_report-preamble.Rmd inst/resources/41b_report-additions.Rmd inst/resources/41c_summary-preamble.Rmd inst/resources/42_eligibility-population-membership.Rmd inst/resources/43_baseline-demographics.Rmd inst/resources/44_delivery-of-study-therapy.Rmd inst/resources/45_safety.Rmd inst/resources/46_efficacy-analysis.Rmd inst/resources/90_file-information.Rmd inst/resources/91_data-queries.Rmd inst/resources/92_EudraCT-report.Rmd inst/resources/APPENDIX_X.Rmd inst/resources/CONTENT_TEMPLATE.Rmd inst/resources/DO.R inst/resources/LOCAL_functions.R inst/resources/index.Rmd inst/resources/index_supporting.Rmd inst/resources/launch_environment.R inst/resources/save_image.R man/CTutilsproject.Rd man/RECIST_COMPLETE.Rd man/RECIST_PARTIAL.Rd man/RECIST_PARTIAL_calculation.Rd man/RECIST_PROGRESSIVE.Rd man/RECIST_PROGRESSIVEabs_calculation.Rd man/RECIST_PROGRESSIVEperc_calculation.Rd man/add_dependency_to_fields.Rd man/all_files_exist.Rd man/calculate_BMI.Rd man/calculate_RECIST_response.Rd man/calculate_dose_modification.Rd man/calculate_missing_data.Rd man/calculate_mode.Rd man/calculate_number_of_instances.Rd man/check_all_files_exist.Rd man/check_extract_date.Rd man/convert_dates_to_EudraCT_age_categories.Rd man/create_SSR_structure.Rd man/create_dummy_dataset.Rd man/create_testresult_string.Rd man/do.Rd man/do_count.Rd man/do_count_comparison.Rd man/do_list_comparison.Rd man/do_list_extraction.Rd man/do_summary.Rd man/example_trial.data.Rd man/example_trial.glossary.Rd man/example_trial.vocabulary.Rd man/expand_dependency_locations_in_glossary.Rd man/expand_glossary.Rd man/expand_trial_data.Rd man/extract_complex_dependencies.Rd man/extract_simple_dependencies.Rd man/find_mode.Rd man/fit_flextable_to_page.Rd man/generate_visit_label.Rd man/get_random_dates.Rd man/initialise_RECIST_VALUES.Rd man/parse_MACRO_DSD_file.Rd man/parse_MACRO_DSD_file_for_glossary_and_dependencies.Rd man/plot_attendance_data.Rd man/plot_missing_data.Rd man/plot_missing_data_detailed.Rd man/print_M0M1_flextable.Rd man/print_data_queries_message.Rd man/print_error.Rd man/print_file_loading_info.Rd man/print_flextable.Rd man/print_labtests_flextable.Rd man/print_message.Rd man/print_signsandsyptoms_flextable.Rd man/print_warning.Rd man/read_EudraCT_vocabulary.Rd man/read_report_YAML.Rd man/record_data_query.Rd man/refactor_variable.Rd man/rejig_panel_dimensions.Rd man/rejig_panel_widths.Rd man/replace_func.Rd man/replace_infinite_numbers.Rd man/replace_missing_number.Rd man/replace_missing_string.Rd man/resolve_individual_filter_statement.Rd man/save_image.Rd man/subchunkify.Rd man/test_fn.Rd man/tidy_logical_expression.Rd vignettes/CTutils-Functions.Rmd vignettes/CTutils-Quickstart.Rmd