RenderReport: Render the rmarkdown file for generating a sample QC report.

In Liubuntu/SeqSQC: A bioconductor package for sample quality check with next generation sequencing data

Render the rmarkdown file for generating a sample QC report.

Description

Function to render the pre-compiled rmarkdown file to generate the sample QC report.

Usage

RenderReport(input, output, interactive = TRUE)

Arguments

input	SeqSQC object with QC results.
output	a character string to define the file name for the QC report.
interactive	whether to generate interative plots in the report. The default is TRUE.

Value

Will incure the rendering of the rmarkdown file for generating the sample QC report. The report will return to the file denoted in output in the function.

Author(s)

Qian Liu [e-mail]

Examples

load(system.file("extdata", "example.seqfile.Rdata", package="SeqSQC"))
RenderReport(seqfile, output="report.html", interactive=FALSE)

Liubuntu/SeqSQC documentation built on April 12, 2024, 6:39 p.m.