SeqSQC-class | R Documentation |
A SeqSQC object is a list of two objects. The first object
gdsfile
is the filepath of the GDS (discussed in section
below) file which stores the genotype information from the original
VCF file. The second object QCresult
is a list of sample
information and QC results, which include the dimension (# of
samples and variants), sample annotation, and QC results for sample
missing rate, sex check, inbreeding outlier check, IBD check, and
population outlier check.
SeqSQC(gdsfile, QCresult = List())
gdsfile(x)
gdsfile(x) <- value
QCresult(x)
QCresult(x) <- value
## S4 method for signature 'SeqSQC'
gdsfile(x)
## S4 replacement method for signature 'SeqSQC'
gdsfile(x) <- value
## S4 method for signature 'SeqSQC'
QCresult(x)
## S4 replacement method for signature 'SeqSQC'
QCresult(x) <- value
gdsfile |
A character string for the filepath of the GDS file. |
QCresult |
A list with sample information and sample QC results. |
x |
an SeqSQCClass object. |
value |
the new value for the SeqSQC object slots. |
The filepath to the gds file.
gdsfile
A character string for the filepath of the GDS file.
QCresult
A list with sample information and sample QC results.
load(system.file("extdata", "example.seqfile.Rdata", package="SeqSQC"))
gdsfile(seqfile)
QCresult(seqfile)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.