SeqSQC-package: Sample Quality Check for NGS Data using SeqSQC package

In Liubuntu/SeqSQC: A bioconductor package for sample quality check with next generation sequencing data

Sample Quality Check for NGS Data using SeqSQC package

Description

SeqSQC

Details

Sample Quality Check for NGS Data.

Author(s)

Qian Liu

See Also

LoadVfile
for data preparation;
MissingRate
PCACheck
Inbreeding
IBDCheck
PCACheck
for individual sample QC checks;
problemList
for the summary of problematic samples with reason and sample list to be removed;
IBDRemove
for the problematic sample pairs detected with cryptic relationship;
RenderReport
to generate the sample QC report;
plotQC
to generate the ggplot or interactive plots in html format for each individual QC check;
sampleQC
for wrapper of data preparation, all sample QC checks, QC result summary, and sample QC report.

Liubuntu/SeqSQC documentation built on April 12, 2024, 6:39 p.m.