inst/Frameworks/LFA3438Framework/LFA34Assessment/1.DataImport.r

In LobsterScience/bio.lobster: Lobster Stock Assessment Tools for DFO Maritimes

# data building

require(bio.survey)
require(bio.lobster)
require(bio.groundfish)
p = bio.lobster::load.environment()
p=list()
p$libs = NULL
fp = file.path(project.datadirectory('bio.lobster'),"analysis")
la()
p$yrs = 1947:p$current.assessment.year
load_all('~/git/bio.survey/')



        # run in windows environment
        #Data dumps
        
        lobster.db("season.dates.redo")

        lobster.db( DS = "logs.redo",  p=p)   # Offshore logs monitoring documents
        logsInSeason = lobster.db("process.logs.redo")
        lobster.db( DS = 'annual.landings.redo', p=p) #static annual landings tabke needs to be updated by CDenton
        lobster.db( DS = 'seasonal.landings.redo', p=p) #static seasonal landings table needs to be updated by CDenton
        nefsc.db( DS = 'odbc.dump.redo',fn.root = file.path(project.datadirectory('bio.lobster'),'data'),p=p)
 

        datayrs=1970:2019
        groundfish.db( DS="gscat.odbc.redo", datayrs=datayrs )
        groundfish.db( DS="gsdet.odbc.redo", datayrs=datayrs )
        groundfish.db( DS="gsinf.odbc.redo", datayrs=datayrs )
  

	        lobster.db( DS = 'annual.landings', p=p) #static annual landings tabke needs to be updated by CDenton
        lobster.db( DS = 'seasonal.landings', p=p) #static seasonal landings table needs to be updated by CDenton
     inf = nefsc.db( DS = 'usinf.clean.redo',fn.root = NULL,p=p)
      ca = nefsc.db( DS = 'uscat.clean.redo',fn.root = NULL,p=p)
      de = nefsc.db( DS = 'usdet.clean.redo',fn.root = NULL,p=p)
         nefsc.db(DS = 'usstrata.area.redo')