arrayIntersections | Counts array of intersections of Cis-regulatory elements... |
bedToRData | Bed to RData |
combineRData | Combines a lot of files .RData in one file |
DFrameToIRange | DataFrame to IRange |
divideByChromosome | Devides by chromosomes |
downloadBedFile | Loads file from URL to tmp |
fetchCell | Select cell line |
fetchCellDFrame | Select cell line |
fetchCellFiles | Select cell line |
fetchCoords | Search by address |
fetchCoordsDFrame | Search by address |
fetchCoordsFiles | Search by address |
fetchID | Select ID |
fetchIDDFrame | Select ID |
fetchIDFiles | Select ID |
fetchTF | Select TF |
fetchTFDFrame | Select TF |
fetchTFFiles | Select TF |
fractionCellTF | Fraction of factors of the dominating cellular line |
frequencyTF | How many regions contain the factor |
hiAnonyme | Verification of loading of package |
inventarisation | Path to choosen set |
loadFromUrlToTmp | Loads file of listing remapR from URL to ~/tmp |
makeAnnexe | Counts MACS-peaks on chromosome |
makeRandomSet | Constructor of random set |
makeSummarySeries | Counts some total information |
powerPeaksNR | How many MACS-peaks are in region for given TF |
remapR | remapR: package to deal with ReMap |
TFBS | CREs for given TF |
TFBSsOnChromosome | CREs for given list of TFs |
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