Man pages for LosevAMU/remapR
Bioinformatic tools to transform ReMap-data in R
| arrayIntersections | Counts array of intersections of Cis-regulatory elements... |
| bedToRData | Bed to RData |
| combineRData | Combines a lot of files .RData in one file |
| DFrameToIRange | DataFrame to IRange |
| divideByChromosome | Devides by chromosomes |
| downloadBedFile | Loads file from URL to tmp |
| fetchCell | Select cell line |
| fetchCellDFrame | Select cell line |
| fetchCellFiles | Select cell line |
| fetchCoords | Search by address |
| fetchCoordsDFrame | Search by address |
| fetchCoordsFiles | Search by address |
| fetchID | Select ID |
| fetchIDDFrame | Select ID |
| fetchIDFiles | Select ID |
| fetchTF | Select TF |
| fetchTFDFrame | Select TF |
| fetchTFFiles | Select TF |
| fractionCellTF | Fraction of factors of the dominating cellular line |
| frequencyTF | How many regions contain the factor |
| hiAnonyme | Verification of loading of package |
| inventarisation | Path to choosen set |
| loadFromUrlToTmp | Loads file of listing remapR from URL to ~/tmp |
| makeAnnexe | Counts MACS-peaks on chromosome |
| makeRandomSet | Constructor of random set |
| makeSummarySeries | Counts some total information |
| powerPeaksNR | How many MACS-peaks are in region for given TF |
| remapR | remapR: package to deal with ReMap |
| TFBS | CREs for given TF |
| TFBSsOnChromosome | CREs for given list of TFs |
