fetchCoordsDFrame: Search by address

In LosevAMU/remapR: Bioinformatic tools to transform ReMap-data in R

Search by address

Description

Function selects in given address.

Usage

fetchCoordsDFrame(dataFrame = "", nameChromosome = "chr21", begin = 605400, end = 629900,
firstCut = "in", secondCut = "in")

Arguments

dataFrame	Data.
nameChromosome	Name of chromosome.
begin	Position of starting of searching on chromosome.
end	Position of ending of searching on chromosome.
firstCut	Can be "in" or "out". Condition of searching. "in" means that begin of MACS-peak can be before param "begin". "out" means that begin of MACS-peak can be only after param "begin".
secondCut	Can be "in" or "out". Condition of searching. "in" means that end of MACS-peak can be after param "end". "out" means that end of MACS-peak can be only before param "end".

Value

Data Frame (class = "data.frame") of peaks in this address.

Author(s)

Alexey Solovyev

Examples

myFrame <- fetchCoordsDFrame(dataFrame = "", nameChromosome = "chr21", begin = 605400,
end = 6299000, firstCut = "in", secondCut = "in")

LosevAMU/remapR documentation built on Sept. 25, 2024, 12:32 p.m.