fractionCellTF: Fraction of factors of the dominating cellular line
In LosevAMU/remapR: Bioinformatic tools to transform ReMap-data in R

Description Usage Arguments Value Author(s) Examples

Function counts fraction of factors of the dominating cellular line.

1 2	fractionCellTF(arrayData = "", nameChromosome = "chr21", begin = "", end = "", firstCut = "in", secondCut = "in", massTF = 50, powerNR = 3, limitPart = 0.2)

`arrayData`	Data or path to data, by default "~/tmp/RData/Output".
`nameChromosome`	Name of chromosome.
`begin`	Position of starting of searching on chromosome.
`end`	Position of ending of searching on chromosome.
`firstCut`	Can be "in" or "out". Condition of searching. "in" means that begin of MACS-peak can be before param "begin". "out" means that begin of MACS-peak can be only after param "begin".
`secondCut`	Can be "in" or "out". Condition of searching. "in" means that end of MACS-peak can be after param "end". "out" means that end of MACS-peak can be only before param "end".
`massTF`	List of TFs or quantity of MACS-peaks to choose CRE.
`powerNR`	Minimal needed quantity of MACS-peaks to choose CRE.
`limitPart`	Minimal needed fraction of TFs.

Data Frame (class = "data.frame") of CREs, dominante cellular line, quantity of type of cellular lines, quantity of different TFs, quantity of TFs of dominating cellular line and fraction of TFs of dominating cellular line.

Alexey Solovyev

1 2	myFrame <- fractionCellTF(arrayData = "", nameChromosome = "chr21", begin = "", end = "", firstCut = "in", secondCut = "in", massTF = 50, powerNR = 3, limitPart = 0.2)