MakeCategoryMatrices: Make catergory matrices

In Louisahadj/Lentiviral_barcoding: A RShiny application for the visualization and analysis of single cell lineage-tracing data

Make catergory matrices

Description

Make catergory matrices

Usage

MakeCategoryMatrices(
  matrixWide,
  metadata,
  indivVar,
  indivVal,
  listVar,
  listVal,
  threshold = 10,
  condition = "no",
  conditionVal = ""
)

Arguments

metadata,	the metadata corresponding to the matrix
indivVar,	name of variable defining individuals
indivVal,	list of selected individuals
listVar,	list of sected variables
listVal,	list of sected values
threshold,	lineage bias minimum threshold (%), default is 10
condition,	is there a condtion, default is "no"
conditionVal,	condition value (only one accepted), default is ""
matrix,	barcode count matrix

Value

a list of two matrices, the category for PlotCategories function and barcode count matrix for PlotCategoryCount function

Louisahadj/Lentiviral_barcoding documentation built on April 7, 2022, 11:29 p.m.