PlotHeatmap: Plot a heatmap

In Louisahadj/Lentiviral_barcoding: A RShiny application for the visualization and analysis of single cell lineage-tracing data

Plot a heatmap

Description

Plot a heatmap

Usage

PlotHeatmap(
  wideMatrix,
  distance = "euclidean",
  clustering = "complete",
  showDendro = "no",
  showBarcodes = "no",
  nClusters = 0,
  columnTextSize = 1
)

Arguments

wideMatrix,	a dataframe treated with LongToWideSubMatrix() or LongToWideSubMatrix_pooledIndiv() functions
distance,	heatmap distance metrics
clustering,	heatmap clustering method
showDendro,	"yes" or "no". If yes, column dendrogram is shown
showBarcodes,	"yes" or "no". If yes, row barcode names are shown
nClusters,	number of clusters to be shown, minimum is 0
columnTextSize,	column text size

Value

a heatmap of samples in wideMatrix

Louisahadj/Lentiviral_barcoding documentation built on April 7, 2022, 11:29 p.m.