Man pages for Lululuella/OVESEG
OVESEG-test to detect tissue/cell-specific markers
| countBT | RNAseq count data downsampled from GSE60424 |
| nullDistri | Probability of one group being upregulated under null |
| OVESEG-package | OVESEG: A package for marker gene test. |
| OVESEGtest | OVESEG-test |
| OVESEGtstat | OVESEG-test statistics |
| OVEtstatPermTopM | OVESEG-test statistics after permuting top M groups |
| pairwise_tstat_unscaled | pairwise t-statistics (unscaled) |
| patternDistri | Probabilities of all upregulation patterns |
| permfunc | Internal function for one permutation task |
| postProbNull | Posterior probabilities of each component null hypothesis |
| pvalueWeightedEst | p-value by weighted permutation scheme |
| RocheBT | mRNA expression data downsampled from GSE28490 (Roche) |
| row_min | min value for each row |
| row_which_max | which.max for each row |
| shuffle_topm | Shuffle the top M groups |
