permfunc: Internal function for one permutation task

In Lululuella/OVESEG: OVESEG-test to detect tissue/cell-specific markers

Description

Internal function for one permutation task

Usage

permfunc(p, y, group, weights, alpha, combM, geneSubset, seeds)

Arguments

p	an integer indicating permutation index
y	an expressions matrix
group	a integer vector indicating group labels
weights	optional numeric matrix containing prior weights
alpha	parameter specifying within-group variance estimator to be used
combM	a integer matrix with each row giving one choice of M groups
geneSubset	a integer vector indicating the probe pattern of combM
seed	an integer seed for the random number generator

Value

test statistics and upregulated group indexes after one permutaion

Lululuella/OVESEG documentation built on May 21, 2019, 2:28 a.m.