patternDistri: Probabilities of all upregulation patterns

Description Usage Arguments Details Value Examples

Description

This function estimates probabilities of all kinds of upregulation patterns among subtypes.

Usage

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patternDistri(ppnull)

Arguments

ppnull

a list returned by postProbNull or OVESEGtest.

Details

The probability of each upregulation pattern is calculated by accumulating and normalizing genewise posterior probability of null hypotheses and of alternative hypotheses.

Value

a data frame object containing all possible upregulation patterns and corresponding probabilities.

Examples

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data(RocheBT)
ppnull <- postProbNull(RocheBT$y, RocheBT$group, alpha='moderated')
pd<- patternDistri(ppnull)

Lululuella/OVESEG documentation built on May 21, 2019, 2:28 a.m.