Files in MASHUOA/HiTMaP
A collection of tools for imaging MS data processing

.gitattributes

.gitignore

DESCRIPTION

HiTMaP.Rproj

LICENSE

NAMESPACE

News

R/Canidate_processing.R R/Canidate_processing_dev.R R/Canidate_processing_dev2.R R/Mummichog_SIL_cpd_anntation.R R/Proteomics_target_selection.R R/ShinyAPP_GUI.R R/Utilities_Cluster_image.R R/Utilities_IMS_processing.R R/Utilities_general.R R/Utilities_proteomics_annotation.R R/main.R R/memory_profiling.R R/testing.R R/workflow.R README.Rmd

README.docx

README.log

README.md

README.tex

README_files/figure-docx/CLuster imaging-1.png

README_files/figure-docx/CLuster imaging-2.png

README_files/figure-docx/CLuster imaging-3.png

README_files/figure-docx/FDR plot-1.png

README_files/figure-docx/FDR plot-2.png

README_files/figure-docx/VisulazeKmean-1.png

README_files/figure-docx/p_Matching_Score_vs_mz plot-1.png

README_files/figure-docx/unnamed-chunk-10-1.png

README_files/figure-docx/unnamed-chunk-13-1.png

README_files/figure-docx/unnamed-chunk-3-1.png

README_files/figure-docx/unnamed-chunk-6-1.png

README_files/figure-gfm/C-1.png

README_files/figure-gfm/CLuster imaging-1.png

README_files/figure-gfm/CLuster imaging-2.png

README_files/figure-gfm/CLuster imaging-3.png

README_files/figure-gfm/CLuster imaging-4.png

README_files/figure-gfm/FDR plot-1.png

README_files/figure-gfm/VisulazeKmean-1.png

README_files/figure-gfm/p_Matching_Score_vs_mz plot-1.png

README_files/figure-gfm/unnamed-chunk-12-1.png

README_files/figure-gfm/unnamed-chunk-13-1.png

README_files/figure-gfm/unnamed-chunk-14-1.png

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README_files/figure-gfm/unnamed-chunk-8-1.png

README_files/figure-gfm/unnamed-chunk-9-1.png

README_files/figure-html/CLuster imaging-1.png

README_files/figure-html/CLuster imaging-2.png

README_files/figure-html/CLuster imaging-3.png

README_files/figure-html/CLuster imaging-4.png

README_files/figure-html/FDR plot-1.png

README_files/figure-html/FDR plot-2.png

README_files/figure-html/VisulazeKmean-1.png

README_files/figure-html/p_Matching_Score_vs_mz plot-1.png

README_files/figure-html/unnamed-chunk-1-1.png

README_files/figure-html/unnamed-chunk-10-1.png

README_files/figure-html/unnamed-chunk-11-1.png

README_files/figure-html/unnamed-chunk-13-1.png

README_files/figure-html/unnamed-chunk-15-1.png

README_files/figure-html/unnamed-chunk-20-1.png

README_files/figure-html/unnamed-chunk-3-1.png

README_files/figure-html/unnamed-chunk-4-1.png

README_files/figure-html/unnamed-chunk-6-1.png

README_files/figure-html/unnamed-chunk-8-1.png

README_files/figure-latex/CLuster imaging-1.png

README_files/figure-latex/CLuster imaging-2.png

README_files/figure-latex/CLuster imaging-3.png

README_files/figure-latex/FDR plot-1.png

README_files/figure-latex/FDR plot-2.png

README_files/figure-latex/VisulazeKmean-1.png

README_files/figure-latex/p_Matching_Score_vs_mz plot-1.png

README_files/figure-latex/unnamed-chunk-13-1.pdf

README_files/figure-latex/unnamed-chunk-6-1.png

Resource/Bovin_lens.png

Resource/DB_stats_bin_mz_ppm.png

Resource/Mouse_brain.png

Resource/PCA_image_MB.png

Resource/docker_gui_setting.png

Resource/spatialKMeans_image_plot_9_segs_mb.png

Todo

inst/HiTMaP_GUI/FutureTaskProcessor.R inst/HiTMaP_GUI/Proteomics/ServerProteomics.R inst/HiTMaP_GUI/app.R

inst/HiTMaP_GUI/hitmap.bat

inst/HiTMaP_GUI/projectdir/Serverproject.R inst/HiTMaP_GUI/projectdir/UIproject.R inst/HiTMaP_GUI/server.R inst/HiTMaP_GUI/shiny.r inst/HiTMaP_GUI/ui.R

inst/HiTMaP_GUI/www/tm.bmp

inst/data/unimod.list.rda

man/Cleavage_rules_fun.Rd man/HiTMaP_GUI.Rd man/Meta_feature_list_fun.Rd man/Peptide_modification.Rd man/Protein_feature_list_fun.Rd man/cluster_image_grid.Rd man/get_atoms.Rd man/grid.ftable.Rd man/imaging_Spatial_Quant.Rd man/imaging_identification.Rd man/merge_atoms.Rd

references.bib

references.bib.bak

rsconnect/documents/HitMaP_notebook.Rmd/rpubs.com/rpubs/Document.dcf

rsconnect/documents/HitMaP_notebook.html/rpubs.com/rpubs/Document.dcf

rsconnect/documents/README.Rmd/rpubs.com/rpubs/Document.dcf

scripts/Docker_cmd.sh

scripts/Docker_file/.gitignore

scripts/Docker_file/Dockerfile_base_latest

scripts/Docker_file/Dockerfile_base_latest_bk

scripts/Docker_file/Dockerfile_base_latest_bk.txt

scripts/Docker_file/Dockerfile_base_latest_upd

scripts/Docker_file/Dockerfile_shiny_hitmap

scripts/Docker_file/Dockerfile_shiny_hitmap_upd

scripts/Docker_file/Dockerfile_shiny_hitmap_upd2

scripts/Docker_file/Dockerfile_studio_latest

scripts/Docker_file/Dockerfile_studio_latest2

scripts/Docker_file/Singularity_base.def

scripts/Docker_file/Singularity_base.defspython

scripts/Docker_file/hitmap_base.sh

scripts/Docker_file/hitmap_shiny_server.sh

scripts/Docker_file/hitmap_shiny_server2.sh

scripts/Docker_file/install.R scripts/Docker_file/install_shiny_deps.R scripts/Docker_file/install_step1.R scripts/Docker_file/install_step2.R

scripts/Docker_file/log.txt

scripts/Docker_file/log_base.txt

scripts/Docker_file/policy.xml

scripts/Docker_file/recipe

scripts/Docker_file/run_hitmap.bat

scripts/Docker_file/sandbox-disable

scripts/Docker_file/windows_cmd_base_latest.bat

scripts/Docker_file/windows_cmd_base_latest_update.bat

scripts/Docker_file/windows_cmd_gui_latest_deployment.bat

scripts/Docker_file/windows_cmd_gui_latest_deployment_update.bat

scripts/Docker_file/windows_cmd_gui_latest_deployment_update2.bat

scripts/Docker_file/windows_cmd_studio_latest.bat

scripts/Dockerfile_v2/Dockerfile_base_latest

scripts/Dockerfile_v2/Dockerfile_base_prep

scripts/Dockerfile_v2/hitmap_base.sh

scripts/Dockerfile_v2/hitmap_shiny_server.sh

scripts/Dockerfile_v2/install.R scripts/Dockerfile_v2/install_step1.R scripts/Dockerfile_v2/install_step2.R

scripts/Dockerfile_v2/log.txt

scripts/Dockerfile_v2/log_base.txt

scripts/Dockerfile_v2/log_base_prep.txt

scripts/Dockerfile_v2/policy.xml

scripts/Dockerfile_v2/run_hitmap.bat

scripts/Dockerfile_v2/run_hitmap_gui.bat

scripts/Dockerfile_v2/windows_cmd_base_latest.bat

scripts/Dockerfile_v2/windows_cmd_nobase_upd.bat

scripts/Install_HiTMaP.sh

scripts/rd2pdfhitmap.bat

shiny_bookmarks/0168a9956183a33d/input.rds

shiny_bookmarks/1a1297c987ce72da/input.rds

MASHUOA/HiTMaP documentation built on Nov. 14, 2024, 5:23 p.m.

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MASHUOA/HiTMaP
A collection of tools for imaging MS data processing

Files in MASHUOA/HiTMaP
A collection of tools for imaging MS data processing

R Package Documentation

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MASHUOA/HiTMaP A collection of tools for imaging MS data processing

Files in MASHUOA/HiTMaP A collection of tools for imaging MS data processing

R Package Documentation

Browse R Packages

We want your feedback!

MASHUOA/HiTMaP
A collection of tools for imaging MS data processing

Files in MASHUOA/HiTMaP
A collection of tools for imaging MS data processing