cluster_image_grid: cluster_image_grid

In MASHUOA/HiTMaP: A collection of tools for imaging MS data processing

cluster_image_grid

Description

This function renders the clustered images for maldi imaging data set

Usage

cluster_image_grid(
  clusterID,
  SMPLIST,
  imdata,
  ClusterID_colname = "Protein",
  componentID_colname = "Peptide",
  Component_plot_threshold = 2,
  Component_plot_coloure = c("mono", "as.cluster"),
  smooth.image = "gaussian",
  contrast.enhance = "suppression",
  colorpallet = "Set1",
  plot_layout = c("line", "grid"),
  export_Header_table = F,
  export_footer_table = F,
  plot_style = c("fleximaging", "ClusterOnly", "rainbow"),
  protein_coverage = F,
  footer_style = "Length",
  output_png_width_limit = 198000,
  attach_summary_cluster = T,
  cluster_color_scale = c("blackwhite", "fleximaging"),
  remove_cluster_from_grid = T,
  img_brightness = 100,
  ppm = 20,
  list_of_protein_sequence,
  workdir = getwd(),
  pixel_size_um = 50,
  Score_thres = NULL
)

MASHUOA/HiTMaP documentation built on Nov. 14, 2024, 5:23 p.m.