Files in MASHUOA/HiTMaP
A collection of tools for imaging MS data processing
.gitattributes
.gitignore
DESCRIPTION
HiTMaP.Rproj
HiTMaP.pdf
Initialize_HiTMaP.R
LICENSE
NAMESPACE
News
R/Canidate_processing.R
R/Canidate_processing_dev.R
R/Canidate_processing_dev2.R
R/Mummichog_SIL_cpd_anntation.R
R/Proteomics_target_selection.R
R/ShinyAPP_GUI.R
R/Utilities_Cluster_image.R
R/Utilities_IMS_processing.R
R/Utilities_general.R
R/Utilities_proteomics_annotation.R
R/main.R
R/memory_profiling.R
R/testing.R
R/workflow.R
README.Rmd
README.docx
README.log
README.md
README.tex
README_files/figure-docx/CLuster imaging-1.png
README_files/figure-docx/CLuster imaging-2.png
README_files/figure-docx/CLuster imaging-3.png
README_files/figure-docx/FDR plot-1.png
README_files/figure-docx/FDR plot-2.png
README_files/figure-docx/VisulazeKmean-1.png
README_files/figure-docx/p_Matching_Score_vs_mz plot-1.png
README_files/figure-docx/unnamed-chunk-10-1.png
README_files/figure-docx/unnamed-chunk-13-1.png
README_files/figure-docx/unnamed-chunk-3-1.png
README_files/figure-docx/unnamed-chunk-6-1.png
README_files/figure-gfm/C-1.png
README_files/figure-gfm/CLuster imaging-1.png
README_files/figure-gfm/CLuster imaging-2.png
README_files/figure-gfm/CLuster imaging-3.png
README_files/figure-gfm/CLuster imaging-4.png
README_files/figure-gfm/FDR plot-1.png
README_files/figure-gfm/VisulazeKmean-1.png
README_files/figure-gfm/p_Matching_Score_vs_mz plot-1.png
README_files/figure-gfm/unnamed-chunk-12-1.png
README_files/figure-gfm/unnamed-chunk-13-1.png
README_files/figure-gfm/unnamed-chunk-14-1.png
README_files/figure-gfm/unnamed-chunk-15-1.png
README_files/figure-gfm/unnamed-chunk-16-1.png
README_files/figure-gfm/unnamed-chunk-20-1.png
README_files/figure-gfm/unnamed-chunk-21-1.png
README_files/figure-gfm/unnamed-chunk-8-1.png
README_files/figure-gfm/unnamed-chunk-9-1.png
README_files/figure-html/CLuster imaging-1.png
README_files/figure-html/CLuster imaging-2.png
README_files/figure-html/CLuster imaging-3.png
README_files/figure-html/CLuster imaging-4.png
README_files/figure-html/FDR plot-1.png
README_files/figure-html/FDR plot-2.png
README_files/figure-html/VisulazeKmean-1.png
README_files/figure-html/p_Matching_Score_vs_mz plot-1.png
README_files/figure-html/unnamed-chunk-1-1.png
README_files/figure-html/unnamed-chunk-10-1.png
README_files/figure-html/unnamed-chunk-11-1.png
README_files/figure-html/unnamed-chunk-13-1.png
README_files/figure-html/unnamed-chunk-15-1.png
README_files/figure-html/unnamed-chunk-20-1.png
README_files/figure-html/unnamed-chunk-3-1.png
README_files/figure-html/unnamed-chunk-4-1.png
README_files/figure-html/unnamed-chunk-6-1.png
README_files/figure-html/unnamed-chunk-8-1.png
README_files/figure-latex/CLuster imaging-1.png
README_files/figure-latex/CLuster imaging-2.png
README_files/figure-latex/CLuster imaging-3.png
README_files/figure-latex/FDR plot-1.png
README_files/figure-latex/FDR plot-2.png
README_files/figure-latex/VisulazeKmean-1.png
README_files/figure-latex/p_Matching_Score_vs_mz plot-1.png
README_files/figure-latex/unnamed-chunk-13-1.pdf
README_files/figure-latex/unnamed-chunk-6-1.png
Resource/Bovin_lens.png
Resource/DB_stats_bin_mz_ppm.png
Resource/Mouse_brain.png
Resource/PCA_image_MB.png
Resource/docker_gui_setting.png
Resource/spatialKMeans_image_plot_9_segs_mb.png
Todo
inst/HiTMaP_GUI/FutureTaskProcessor.R
inst/HiTMaP_GUI/Proteomics/ServerProteomics.R
inst/HiTMaP_GUI/app.R
inst/HiTMaP_GUI/hitmap.bat
inst/HiTMaP_GUI/projectdir/Serverproject.R
inst/HiTMaP_GUI/projectdir/UIproject.R
inst/HiTMaP_GUI/server.R
inst/HiTMaP_GUI/shiny.r
inst/HiTMaP_GUI/ui.R
inst/HiTMaP_GUI/www/tm.bmp
inst/data/unimod.list.rda
man/Cleavage_rules_fun.Rd
man/HiTMaP_GUI.Rd
man/Meta_feature_list_fun.Rd
man/Peptide_modification.Rd
man/Protein_feature_list_fun.Rd
man/cluster_image_grid.Rd
man/get_atoms.Rd
man/grid.ftable.Rd
man/imaging_Spatial_Quant.Rd
man/imaging_identification.Rd
man/merge_atoms.Rd
references.bib
references.bib.bak
rsconnect/documents/HitMaP_notebook.Rmd/rpubs.com/rpubs/Document.dcf
rsconnect/documents/HitMaP_notebook.html/rpubs.com/rpubs/Document.dcf
rsconnect/documents/README.Rmd/rpubs.com/rpubs/Document.dcf
scripts/Docker_cmd.sh
scripts/Docker_file/Dockerfile_base_latest
scripts/Docker_file/Dockerfile_base_latest_upd
scripts/Docker_file/Dockerfile_shiny_hitmap
scripts/Docker_file/Dockerfile_shiny_hitmap_upd
scripts/Docker_file/Dockerfile_shiny_hitmap_upd2
scripts/Docker_file/Dockerfile_studio_latest
scripts/Docker_file/Dockerfile_studio_latest2
scripts/Docker_file/hitmap_shiny_server.sh
scripts/Docker_file/hitmap_shiny_server2.sh
scripts/Docker_file/install.R
scripts/Docker_file/install_shiny_deps.R
scripts/Docker_file/install_step1.R
scripts/Docker_file/install_step2.R
scripts/Docker_file/log.txt
scripts/Docker_file/log_base.txt
scripts/Docker_file/policy.xml
scripts/Docker_file/run_hitmap.bat
scripts/Docker_file/windows_cmd_base_latest.bat
scripts/Docker_file/windows_cmd_base_latest_update.bat
scripts/Docker_file/windows_cmd_gui_latest_deployment.bat
scripts/Docker_file/windows_cmd_gui_latest_deployment_update.bat
scripts/Docker_file/windows_cmd_gui_latest_deployment_update2.bat
scripts/Docker_file/windows_cmd_studio_latest.bat
scripts/Install_HiTMaP.sh
scripts/rd2pdfhitmap.bat
shiny_bookmarks/0168a9956183a33d/input.rds
shiny_bookmarks/1a1297c987ce72da/input.rds
