Description Usage Arguments Value Examples
View source: R/getDataPlatform.R
Load an entire platform's data across all diseases and samples. WARNING: This can be very large and slow. Do this only on machines with more than 64GB of free memory.
1 2 3 | getDataPlatform_GeneSymbol_Mutations(
theZipFile="/geneSurveyData/GeneSurvey.zip",
theVerboseFlag = FALSE)
|
theZipFile |
Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/geneSurveyData/GeneSurvey.zip". NOTE: This is a subdirectory of the main GENE_REPORT directory. |
theVerboseFlag |
Default: FALSE. TRUE means write all output, which can be very verbose. |
A matrix with sample ids as columns and gene symbols as rows. Samples and row ids are in sorted order, not requested order.
1 | #See examples in tests directory in the install.
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