getDataPlatform_Probe_Meth450: getDataPlatform_Probe_Meth450

In MD-Anderson-Bioinformatics/GeneSurvey: MD Anderson Gene Survey

Description

Load an entire platform's data across all diseases and samples. WARNING: This can be very large and slow. Do this only on machines with more than 64GB of free memory.

Usage

getDataPlatform_Probe_Meth450(
theZipFile="/geneSurveyData/GeneSurvey.zip",
theVerboseFlag = FALSE)

Arguments

theZipFile	Default: For DQS Servers. If you are on a server where the GENE_REPORT directory is on a different path, you can pass in a value to override the default of "/geneSurveyData/GeneSurvey.zip". NOTE: This is a subdirectory of the main GENE_REPORT directory.
theVerboseFlag	Default: FALSE. TRUE means write all output, which can be very verbose.

Value

A matrix with sample ids (barcodes) as columns and probes as rows. Samples and row ids are in sorted order, not requested order.

Examples

#See examples in tests directory in the install.

MD-Anderson-Bioinformatics/GeneSurvey documentation built on May 7, 2019, 2:04 p.m.