Files in MD-Anderson-Bioinformatics/GeneSurvey
MD Anderson Gene Survey
.Rbuildignore
DESCRIPTION
GeneSurvey.Rproj
NAMESPACE
NEWS
R/GSColors.R
R/GeneSurvey.R
R/filterForCommonSamples.R
R/getContrast.R
R/getData.R
R/getDataClinical.R
R/getDataObject.R
R/getDataPlatform.R
R/getDelta.R
R/getImputedNAs.R
R/getMetadataPop.R
R/getMetadataTcga_Name.R
R/getMetadata_Gene.R
R/getMetadata_HG.R
R/getMetadata_Probe.R
R/getMirs.R
R/getMutationDetails.R
R/getNames.R
R/getNames_ProbeFromGeneSymbol.R
R/getOneToOne.R
R/getTranscriptsAndExons.R
R/plot.R
R/plotAssays.R
R/plotGeneArchitecture.R
R/plotGeneric.R
R/plotHeatmap.R
R/plotMutations.R
R/zzz.R
README.md
inst/GSAccess/GSAccess.jar
inst/GSAccess/commons-codec-1.9.jar
man/filterForCommonSamples.Rd
man/geneSymbolsForDataset.Rd
man/geneSymbolsMatchDataset.Rd
man/get.Chromosome.Rd
man/get.Data.Rd
man/get.DerivedFrom.Rd
man/get.GeneId.Rd
man/get.GeneStructure.Rd
man/get.GeneSymbol.Rd
man/get.GenomeAnnotations.Rd
man/get.LocationEnd.Rd
man/get.LocationStart.Rd
man/get.MimatId.Rd
man/get.MirId.Rd
man/get.MirType.Rd
man/get.Name.Rd
man/get.ProbeLocation.Rd
man/get.SampleAnnotations.Rd
man/get.Strand.Rd
man/get.TissueAnnotations.Rd
man/get.VersionIndex.Rd
man/getBaseDir.Rd
man/getColorsForDiseases.Rd
man/getContrast.Rd
man/getDataClinical.Rd
man/getDataMatrix_GeneSymbol_Meth27.Rd
man/getDataMatrix_GeneSymbol_Meth450.Rd
man/getDataObject_CombinedHsaMimat_miRNASeq.Rd
man/getDataObject_GeneSymbol_Meth27.Rd
man/getDataObject_GeneSymbol_Meth450.Rd
man/getDataObject_GeneSymbol_Mutations.Rd
man/getDataObject_GeneSymbol_RnaSeq.Rd
man/getDataObject_GeneSymbol_RnaSeq2.Rd
man/getDataObject_GeneSymbol_SNP6.Rd
man/getDataObject_Probe_Meth27.Rd
man/getDataObject_Probe_Meth450.Rd
man/getDataPlatform_CombinedHsaMimat_miRNASeq.Rd
man/getDataPlatform_GeneSymbol_Mutations.Rd
man/getDataPlatform_GeneSymbol_RnaSeq.Rd
man/getDataPlatform_GeneSymbol_RnaSeq2.Rd
man/getDataPlatform_GeneSymbol_SNP6.Rd
man/getDataPlatform_Probe_Meth27.Rd
man/getDataPlatform_Probe_Meth450.Rd
man/getDataVersion.Rd
man/getData_CombinedHsaMimat_miRNASeq.Rd
man/getData_GeneSymbol_MutationDetails.Rd
man/getData_GeneSymbol_Mutations.Rd
man/getData_GeneSymbol_RnaSeq.Rd
man/getData_GeneSymbol_RnaSeq2.Rd
man/getData_GeneSymbol_SNP6.Rd
man/getData_Probe_Meth27.Rd
man/getData_Probe_Meth450.Rd
man/getExons_GeneSymbol_HG19.Rd
man/getImputedNAs_CombinedHsaMimat_miRNASeq.Rd
man/getImputedNAs_GeneSymbol_RnaSeq.Rd
man/getImputedNAs_GeneSymbol_RnaSeq2.Rd
man/getImputedNAs_GeneSymbol_SNP6.Rd
man/getImputedNAs_Probe_Meth27.Rd
man/getImputedNAs_Probe_Meth450.Rd
man/getMetadataPop_BarcodeDisease.Rd
man/getMetadataPop_BarcodeSamplecode.Rd
man/getMetadataPop_PatientDisease.Rd
man/getMetadata_GeneByNeighbor_HG18.Rd
man/getMetadata_GeneByNeighbor_HG19.Rd
man/getMetadata_GeneByNeighbor_RnaSeq.Rd
man/getMetadata_GeneByNeighbor_RnaSeq2.Rd
man/getMetadata_Gene_HG18.Rd
man/getMetadata_Gene_HG19.Rd
man/getMetadata_Gene_Mutations.Rd
man/getMetadata_Gene_RnaSeq.Rd
man/getMetadata_Gene_RnaSeq2.Rd
man/getMetadata_ProbeByNeighbor_Meth27.Rd
man/getMetadata_ProbeByNeighbor_Meth450.Rd
man/getMetadata_Probe_Meth27.Rd
man/getMetadata_Probe_Meth450.Rd
man/getMirs_List_Mimat.Rd
man/getMirs_List_Mir.Rd
man/getMirs_Metadata_Mimat.Rd
man/getMirs_Metadata_Mir.Rd
man/getMutationDetails_Dataframe.Rd
man/getNames_CombinedHsaMimat_miRNASeq.Rd
man/getNames_GeneSymbol_Meth27.Rd
man/getNames_GeneSymbol_Meth450.Rd
man/getNames_GeneSymbol_Mutations.Rd
man/getNames_GeneSymbol_RnaSeq.Rd
man/getNames_GeneSymbol_RnaSeq2.Rd
man/getNames_GeneSymbol_SNP6.Rd
man/getNames_Mutation_Details.Rd
man/getNames_ProbeFromGeneSymbol_Meth27.Rd
man/getNames_ProbeFromGeneSymbol_Meth450.Rd
man/getNames_Probe_Meth27.Rd
man/getNames_Probe_Meth450.Rd
man/getOneToOne_GeneSymbol_List.Rd
man/getOneToOne_GeneSymbol_UCID.Rd
man/getOneToOne_UCID_GeneSymbol.Rd
man/getOneToOne_UCSC_List.Rd
man/getSynonyms.Rd
man/getTranscripts_GeneSymbol_HG19.Rd
man/getZipDir.Rd
man/initGeneReport.Rd
man/loadDataObject.Rd
man/plotAssays.Rd
man/plotGenericOutput.Rd
man/plotHeatmapOutput.Rd
man/plot_CombinedHsaMimat_miRNASeq.Rd
man/plot_GeneSymbol_Meth27.Rd
man/plot_GeneSymbol_Meth450.Rd
man/plot_GeneSymbol_Mutations.Rd
man/plot_GeneSymbol_RnaSeq.Rd
man/plot_GeneSymbol_RnaSeq2.Rd
man/plot_GeneSymbol_SNP6.Rd
man/plot_Probe_Meth27.Rd
man/plot_Probe_Meth450.Rd
tests/filterForCommonSamples.R
tests/geneSymbolsForDataset.R
tests/geneSymbolsMatchDataset.R
tests/getColorsForDiseases.R
tests/getContrast.R
tests/getDataClinical.R
tests/getDataMatrix_GeneSymbol_Meth27.R
tests/getDataMatrix_GeneSymbol_Meth450.R
tests/getDataObject_CombinedHsaMimat_miRNASeq.R
tests/getDataObject_GeneSymbol_Meth27.R
tests/getDataObject_GeneSymbol_Meth450.R
tests/getDataObject_GeneSymbol_Mutations.R
tests/getDataObject_GeneSymbol_RnaSeq.R
tests/getDataObject_GeneSymbol_RnaSeq2.R
tests/getDataObject_GeneSymbol_SNP6.R
tests/getDataObject_Probe_Meth27.R
tests/getDataObject_Probe_Meth450.R
tests/getDataPlatform_CombinedHsaMimat_miRNASeq.R
tests/getDataPlatform_GeneSymbol_Mutations.R
tests/getDataPlatform_GeneSymbol_RnaSeq.R
tests/getDataPlatform_GeneSymbol_RnaSeq2.R
tests/getDataPlatform_GeneSymbol_SNP6.R
tests/getDataPlatform_Probe_Meth27.R
tests/getDataPlatform_Probe_Meth450.R
tests/getDataVersion.R
tests/getData_CombinedHsaMimat_miRNASeq.R
tests/getData_GeneSymbol_MutationDetails.R
tests/getData_GeneSymbol_Mutations.R
tests/getData_GeneSymbol_RnaSeq.R
tests/getData_GeneSymbol_RnaSeq2.R
tests/getData_GeneSymbol_SNP6.R
tests/getData_Probe_Meth27.R
tests/getData_Probe_Meth450.R
tests/getExons.R
tests/getImputedNAs_CombinedHsaMimat_miRNASeq.R
tests/getImputedNAs_GeneSymbol_RnaSeq.R
tests/getImputedNAs_GeneSymbol_RnaSeq2.R
tests/getImputedNAs_GeneSymbol_SNP6.R
tests/getImputedNAs_Probe_Meth27.R
tests/getImputedNAs_Probe_Meth450.R
tests/getMetadataPop_BarcodeDisease.R
tests/getMetadataPop_BarcodeSamplecode.R
tests/getMetadataPop_PatientDisease.R
tests/getMetadata_GeneByNeighbor_HG18.R
tests/getMetadata_GeneByNeighbor_HG19.R
tests/getMetadata_GeneByNeighbor_RnaSeq.R
tests/getMetadata_GeneByNeighbor_RnaSeq2.R
tests/getMetadata_Gene_HG18.R
tests/getMetadata_Gene_HG19.R
tests/getMetadata_Gene_Mutations.R
tests/getMetadata_Gene_RnaSeq.R
tests/getMetadata_Gene_RnaSeq2.R
tests/getMetadata_ProbeByNeighbor_Meth27.R
tests/getMetadata_ProbeByNeighbor_Meth450.R
tests/getMetadata_Probe_Meth27.R
tests/getMetadata_Probe_Meth450.R
tests/getMirs_List_Mimat.R
tests/getMirs_List_Mir.R
tests/getMirs_Metadata_Mimat.R
tests/getMirs_Metadata_Mir.R
tests/getMutationDetails_Dataframe.R
tests/getNames_CombinedHsaMimat_miRNASeq.R
tests/getNames_GeneSymbol_Meth27.R
tests/getNames_GeneSymbol_Meth450.R
tests/getNames_GeneSymbol_Mutations.R
tests/getNames_GeneSymbol_RnaSeq.R
tests/getNames_GeneSymbol_RnaSeq2.R
tests/getNames_GeneSymbol_SNP6.R
tests/getNames_Mutation_Details.R
tests/getNames_ProbeFromGeneSymbol_Meth27.R
tests/getNames_ProbeFromGeneSymbol_Meth450.R
tests/getNames_Probe_Meth27.R
tests/getNames_Probe_Meth450.R
tests/getOneToOne_GeneSymbol_List.R
tests/getOneToOne_GeneSymbol_UCID.R
tests/getOneToOne_UCID_GeneSymbol.R
tests/getOneToOne_UCSC_List.R
tests/getSynonyms.R
tests/getTranscripts.R
tests/plotAssays.R
tests/plotGenericOutput.R
tests/plotHeatmapOutput.R
tests/plot_CombinedHsaMimat_miRNASeq.R
tests/plot_GeneSymbol_Meth27.R
tests/plot_GeneSymbol_Meth450.R
tests/plot_GeneSymbol_Mutations.R
tests/plot_GeneSymbol_RnaSeq.R
tests/plot_GeneSymbol_RnaSeq2.R
tests/plot_GeneSymbol_SNP6.R
tests/plot_Probe_Meth27.R
tests/plot_Probe_Meth450.R
