#GeneSurvey Copyright 2014, 2015, 2016 University of Texas MD Anderson Cancer Center
#
#This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version.
#
#This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
#
#You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
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# internal
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getMetadataTcga_Name_internal <- function(theId, theZipFile, theMethodString, theVerboseFlag)
{
setJavaVerboseFlag(theVerboseFlag)
verboseMessage("getMetadataTcga_Name_internal theId=", theId, theVerboseFlag=theVerboseFlag)
verboseMessage("getMetadataTcga_Name_internal theMethodString=", theMethodString, theVerboseFlag=theVerboseFlag)
results <- NULL
jReadGeneObj <- .jnew("org/mda/bcb/gsaccess/CallFromR", theZipFile)
results <- .jcall(jReadGeneObj, returnSig = "Ljava/lang/String;", method=theMethodString,
.jnew("java/lang/String",theId))
results
}
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# used outside file but not exported
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getMetadataTcga_Name_Dataset <- function(theId, theZipFile="/geneSurveyData/GeneSurvey.zip", theVerboseFlag=FALSE)
{
getMetadataTcga_Name_internal(theId, theZipFile, 'getMetadataTcga_DatasetName', theVerboseFlag=theVerboseFlag)
}
getMetadataTcga_Name_Disease <- function(theId, theZipFile="/geneSurveyData/GeneSurvey.zip", theVerboseFlag=FALSE)
{
getMetadataTcga_Name_internal(theId, theZipFile, 'getMetadataTcga_DiseaseName', theVerboseFlag=theVerboseFlag)
}
getMetadataTcga_Name_SampleType <- function(theId, theZipFile="/geneSurveyData/GeneSurvey.zip", theVerboseFlag=FALSE)
{
getMetadataTcga_Name_internal(theId, theZipFile, 'getMetadataTcga_SampleTypeName', theVerboseFlag=theVerboseFlag)
}
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