plotGenericOutput: plotGenericOutput
In MD-Anderson-Bioinformatics/GeneSurvey: MD Anderson Gene Survey

Description Usage Arguments Details Value Examples

Creates a stripchart plot with optional replicate plot.

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plotGenericOutput(theGeneEq, theOutputDir, myGeneData, myBarcodeDiseases,
myBarcodeSampleType, theDataType, theDataTypeLabel, theVerboseFlag,
theTag, theGeneEqPre="", theReplicateFlag=FALSE, theExtraTitle="")

`theGeneEq`	A string used to form the title and file name for the images. This should be the gene equivalent being plotted.
`theOutputDir`	Directory in which to create the output
`myGeneData`	Data in the format from the getData function for a data type. This is a matrix with barcodes (or patiend ids) as columns (colnames) and rows (rownames) as genes. For this function there should only be one gene.
`myBarcodeDiseases`	Data in the format from the getMetadataPop_PatientDisease or getMetadataPop_BarcodeDisease function. This is a vector of string values (diseases) with the patient ids or barcodes as the names(). Regular data uses barcodes, delta data uses patient ids.
`myBarcodeSampleType`	Data in the format from the getMetadataPop_BarcodeSamplecode or getMetadataPop_PatientDisease. This is a vector of string values (diseases) with the patient ids or barcodes as the names(). Regular data uses barcodes, delta data uses patient ids.
`theDataType`	The data type is a string for the platform that is used in the title and file name.
`theDataTypeLabel`	A string label for the Y axis, describing the data type being plotted.
`theVerboseFlag`	TRUE means write all output, which can be very verbose. This has no default here.
`theTag`	An optional tag used to form the last part of the title and file name. This might be a good place to describe your data tweaks. Use "" to skip use.
`theGeneEqPre`	An optional tag used at the beginning of the title and file name. Use "" to skip use.
`theReplicateFlag`	TRUE means to write a replicates plot.
`theExtraTitle`	...