#GeneSurvey Copyright 2014, 2015, 2016 University of Texas MD Anderson Cancer Center
#
#This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version.
#
#This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
#
#You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
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filterForCommonSamples <- function(...)
{
commonSamples <- NULL
allNames <- lapply(list(...), function(theData)
{
stopifnot(is.matrix(theData))
substring(colnames(theData), 1, 15)
})
for (index in 1:length(allNames))
{
if (is.null(commonSamples))
{
commonSamples <- allNames[[index]]
}
else
{
commonSamples <- intersect(commonSamples, allNames[[index]])
}
}
results <- lapply(list(...), function(theDataSet, theCommonList)
{
colnames(theDataSet) <- substring(colnames(theDataSet), 1, 15)
theDataSet[,theCommonList]
}, theCommonList=commonSamples)
results
}
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