Man pages for MJS-708/MSIprocessing
R package for processing MSI data - specifically extends Cardinal functionality
| calc_svds | Function to Calculate svd of specific mz feature - using... |
| checkAdductPair | Function to check colocalisation of suspected adduct pair |
| createDatamatrix | Function to create data matrix from MSI object |
| create_xyMatrix | Function to create x,y matrix for each feature - for feature... |
| error | Function to calculate ppm error between mz value and... |
| exampleMSI_object | Small MSI object pen ink |
| impute_scale | Imputes Missing Values and scales MSI object |
| med | Function to calculate median of vector excluding 0s and... |
| medianNorm | Function for median normalisation |
| missing_values_df | Function to imputes Missing Values into data matrix using knn |
| myMean | Function to calculate mean of vector excluding 0s |
| myMed | Function to calculate median of vector excluding 0s |
| normPixelsDF_anatomies | Function to create dataframe with information about all... |
| pixelDF_NormCompare | Function to create dataframe with information about specific... |
| pixelsDF_NormCompare | Function to create dataframe with information about all... |
| ppm_limits | Function to calculate tolerance m/z values from m/z value and... |
| scale_colour_Publication | ggplot theme colour |
| scale_fill_Publication | ggplot theme fill |
| theme_Publication | ggplot theme general |
