checkAdductPair: Function to check colocalisation of suspected adduct pair
In MJS-708/MSIprocessing: R package for processing MSI data - specifically extends Cardinal functionality
Description
Usage
Arguments
Value
Description
Function to check colocalisation of suspected adduct pair
Usage
1
checkAdductPair(MSIobject, mz1, mz2, threshold, method = "M1", topn = 20)
Arguments
MSIobject
MSI object from Cardinal
mz1
First mz value to run colocalisation against
mz2
Second mz value to check colocalisation score above given value
threshold
Threshold score to define whether features colocalise
method
Method to use for scoring colocalisation (Default = c("M1"))
topn
Number of top colocalised features to check (default = 20)
Value
Boolean whether mz feature colocalise
MJS-708/MSIprocessing documentation built on Dec. 17, 2021, 2:11 a.m.
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Description Usage Arguments Value
Description
Function to check colocalisation of suspected adduct pair
Usage
1 | checkAdductPair(MSIobject, mz1, mz2, threshold, method = "M1", topn = 20)
|
Arguments
MSIobject |
MSI object from Cardinal |
mz1 |
First mz value to run colocalisation against |
mz2 |
Second mz value to check colocalisation score above given value |
threshold |
Threshold score to define whether features colocalise |
method |
Method to use for scoring colocalisation (Default = c("M1")) |
topn |
Number of top colocalised features to check (default = 20) |
Value
Boolean whether mz feature colocalise
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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