pixelsDF_NormCompare: Function to create dataframe with information about all...
In MJS-708/MSIprocessing: R package for processing MSI data - specifically extends Cardinal functionality
Description
Usage
Arguments
Value
Description
Function to create dataframe with information about all pixels in defined anatomical region of MSI object
Usage
1
pixelsDF_NormCompare(MSIobject, pixels, anatomy, normalisation, medianDF)
Arguments
MSIobject
MSI object from Cardinal
pixels
pixels to select spectra from
anatomy
label for the anatomical region pixels belongs to
normalisation
Which normalisation step has been applied to 'MSIobject'
medianDF
median spectrum to compare to
Value
Dataframe with headers: pixel, anatomy, mz, intensity (of mz feature), median, FC (to the median spectrum)
MJS-708/MSIprocessing documentation built on Dec. 17, 2021, 2:11 a.m.
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Description Usage Arguments Value
Description
Function to create dataframe with information about all pixels in defined anatomical region of MSI object
Usage
1 | pixelsDF_NormCompare(MSIobject, pixels, anatomy, normalisation, medianDF)
|
Arguments
MSIobject |
MSI object from Cardinal |
pixels |
pixels to select spectra from |
anatomy |
label for the anatomical region pixels belongs to |
normalisation |
Which normalisation step has been applied to 'MSIobject' |
medianDF |
median spectrum to compare to |
Value
Dataframe with headers: pixel, anatomy, mz, intensity (of mz feature), median, FC (to the median spectrum)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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