normPixelsDF_anatomies: Function to create dataframe with information about all...
In MJS-708/MSIprocessing: R package for processing MSI data - specifically extends Cardinal functionality
Description
Usage
Arguments
Value
Description
Function to create dataframe with information about all pixels in several defined anatomical regions of MSI object
Specifically used to compare distribution of feature distributions in different anatomical regions after normalisation
Usage
1
2
3
4
5
6
7
normPixelsDF_anatomies(
MSIobject,
pixel_list,
anatomies,
normalisation,
medianDF
)
Arguments
MSIobject
MSI object from Cardinal
pixel_list
list of pixel vectors from different anatomical regions
anatomies
vector of labels for the different anatomical regions pixels belongs to (same order as 'pixel_list')
normalisation
Which normalisation step has been applied to 'MSIobject'
medianDF
median spectrum to compare to
Value
Dataframe with headers: pixel, anatomy, mz, intensity (of mz feature), median, FC (to the median spectrum)
MJS-708/MSIprocessing documentation built on Dec. 17, 2021, 2:11 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Function to create dataframe with information about all pixels in several defined anatomical regions of MSI object Specifically used to compare distribution of feature distributions in different anatomical regions after normalisation
Usage
1 2 3 4 5 6 7 | normPixelsDF_anatomies(
MSIobject,
pixel_list,
anatomies,
normalisation,
medianDF
)
|
Arguments
MSIobject |
MSI object from Cardinal |
pixel_list |
list of pixel vectors from different anatomical regions |
anatomies |
vector of labels for the different anatomical regions pixels belongs to (same order as 'pixel_list') |
normalisation |
Which normalisation step has been applied to 'MSIobject' |
medianDF |
median spectrum to compare to |
Value
Dataframe with headers: pixel, anatomy, mz, intensity (of mz feature), median, FC (to the median spectrum)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.