mappings_gene_to_protein: Return protein uniprot_id from associated genes

In MRCIEU/epigraphdb-r: Interface Package for the 'EpiGraphDB' Platform

Return protein uniprot_id from associated genes

Description

POST /mappings/gene-to-protein

Usage

mappings_gene_to_protein(
  gene_name_list = NULL,
  gene_id_list = NULL,
  by_gene_id = FALSE,
  mode = c("table", "raw")
)

Arguments

gene_name_list	List of HGNC symbols of the genes (default)
gene_id_list	List of Ensembl gene IDs (when by_gene_id == TRUE)
by_gene_id	Search for gene ids (Ensembl gene IDs) instead of gene names (HGNC symbols)
mode	If mode = "table", returns a data frame (a tibble as per tidyverse convention). If mode = "raw", returns a raw response from EpiGraphDB API with minimal parsing done by httr.

Value

Data from POST /mappings/gene-to-protein

Examples

# By HGNC symbols
## Not run: 
mappings_gene_to_protein(gene_name_list = c("GCH1", "MYOF"))

## End(Not run)

# By Enselbl Ids
## Not run: 
mappings_gene_to_protein(gene_id_list = c("ENSG00000162594", "ENSG00000113302"), by_gene_id = TRUE)

## End(Not run)

MRCIEU/epigraphdb-r documentation built on Aug. 29, 2022, 4:05 a.m.