pqtl | R Documentation |
pqtl( query, rtype = c("mrres", "simple", "sglmr", "inst", "sense"), pvalue = 0.05, searchflag = c("traits", "proteins"), mode = c("table", "raw") )
query |
(Required) A protein coding gene name or a trait name,
e.g. "ADAM19" or "Inflammatory bowel disease"
which cannot be |
rtype |
(Optional) A type of data to be extracted, which can be one of these options:
|
pvalue |
(Optional) A pvalue threshold for MR results with the DEFAULT set to 0.05.
NOTE: this threshold applies to any |
searchflag |
(Required) A flag to indicate whether you are searching for proteins or
traits which cannot be |
mode |
If |
Data from GET /pqtl/
# Returns a data frame of MR results, while searching for proteins ## Not run: pqtl(query = "ADAM19", searchflag = "proteins") ## End(Not run) # Returns a data frame with SNP information, while searching for traits ## Not run: pqtl( query = "Inflammatory bowel disease", rtype = "inst", searchflag = "traits" ) ## End(Not run) # Change a pvalue threshold (the default is 0.05) ## Not run: pqtl( query = "Inflammatory bowel disease", rtype = "inst", pvalue = 1.0, searchflag = "traits" ) ## End(Not run) # Returns raw response if mode="raw" ## Not run: pqtl( query = "ADAM19", searchflag = "proteins", mode = "raw" ) %>% str() ## End(Not run)
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