Files in MRCIEU/metaboprep
Metabolomics data preparation and processing pipeline
DESCRIPTION
INDEX
LICENSE
LICENSE.md
NAMESPACE
R/batch_normalization.R
R/cramerV.R
R/data.R
R/eval.power.binary.R
R/eval.power.binary.imbalanced.R
R/eval.power.cont.R
R/feature.describe.R
R/feature.missingness.R
R/feature.outliers.R
R/feature.sum.stats.R
R/feature.tree.independence.R
R/feature_plots.R
R/find.PA.effect.sizes.2.sim.R
R/find.cont.effect.sizes.2.sim.R
R/generate_report.R
R/greedy.pairwise.n.filter.R
R/id.outliers.R
R/make.cor.matrix.R
R/make.tree.R
R/median_impute.R
R/met2batch.R
R/missingness.sum.R
R/multivariate.anova.R
R/outlier.matrix.R
R/outlier.summary.R
R/outliers.R
R/pc.and.outliers.R
R/pca.factor.analysis.R
R/pcapairs_bymoose.R
R/perform.metabolite.qc.R
R/read.in.metabolon.R
R/read.in.nightingale.R
R/rntransform.R
R/run.cont.power.make.plot.R
R/run.pa.imbalanced.power.make.plot.R
R/sam.missingness.exclusion.R
R/sample.missingness.R
R/sample.outliers.R
R/sample.sum.stats.R
R/sysdata.rda
R/total.peak.area.R
R/tree_and_independent_features.R
R/variable.by.factor.R
README.md
data/ng_anno.rda
example_data/excel/metabolon_v1_example.xlsx
example_data/excel/parameter_file.txt
example_data/flat_text/feature_data.txt
example_data/flat_text/metabolite_data.txt
example_data/flat_text/parameter_file.txt
example_data/flat_text/sample_data.txt
images/f_missingness_by_batch.png
images/metaboprep_filtering_flow.png
images/metaboprep_workflow.png
images/missingness_by_batch.png
images/missingness_hist.png
images/missingness_matrix.png
images/outlier_pca.png
images/power_v2.png
images/summary_of_qc_data.png
images/tsa_by_batch.png
images/wstats.png
inst/extdata/ng_anno.txt
inst/figures/metaboprep.png
inst/rmarkdown/metaboprep_Report.Rmd
inst/rmarkdown/metaboprep_Report_v0.Rmd
inst/rmarkdown/skeleton/metaboprep_workflow.png
man/batch_normalization.Rd
man/cramerV.Rd
man/eval.power.binary.Rd
man/eval.power.binary.imbalanced.Rd
man/eval.power.cont.Rd
man/feature.describe.Rd
man/feature.missingness.Rd
man/feature.outliers.Rd
man/feature.sum.stats.Rd
man/feature.tree.independence.Rd
man/feature_plots.Rd
man/figures/metaboprep_workflow.png
man/find.PA.effect.sizes.2.sim.Rd
man/find.cont.effect.sizes.2.sim.Rd
man/generate_report.Rd
man/greedy.pairwise.n.filter.Rd
man/id.outliers.Rd
man/make.cor.matrix.Rd
man/make.tree.Rd
man/median_impute.Rd
man/met2batch.Rd
man/missingness.sum.Rd
man/multivariate.anova.Rd
man/ng_anno.Rd
man/outlier.matrix.Rd
man/outlier.summary.Rd
man/outliers.Rd
man/pc.and.outliers.Rd
man/pca.factor.analysis.Rd
man/pcapairs_bymoose.Rd
man/perform.metabolite.qc.Rd
man/read.in.metabolon.Rd
man/read.in.nightingale.Rd
man/rntransform.Rd
man/run.cont.power.make.plot.Rd
man/run.pa.imbalanced.power.make.plot.Rd
man/sam.missingness.exclusion.Rd
man/sample.missingness.Rd
man/sample.outliers.Rd
man/sample.sum.stats.Rd
man/total.peak.area.Rd
man/tree_and_independent_features.Rd
man/variable.by.factor.Rd
parameter_file.sh
run_metaboprep_pipeline.R
