Man pages for MaayanLab/genesetr
Manipulate, Test, and Visualize Gene Set Overlaps
| chea_example | ChEA gene set library |
| checkLib | Check library format compliance with genesetr formats. |
| encode_example | ENCODE gene set library |
| ensembl2HGNC | Maps Ensembl transcript and gene ids to HGNC-approved gene... |
| fastFET | Fast version of Fisher Exact Test |
| getGenes | Unique Genes in a Library |
| hello | Hello, World! |
| HGNCapproved | Determine whether there are weights associated with genes. |
| isWeightedLib | Determine whether there are weights associated with genes. |
| jaccardDist | Jaccard Distance for Multiple Contigency Tables |
| jaccardInd | Jaccard Index for Multiple Contigency Tables |
| lib2HGNC | Map all genes in a genesetr library object to HGNC-approved... |
| loadGMT | Load GMT from disk. |
| loadLongDF | Load a LongDF format gene set library from disk. |
| loadMat | Load a MatLib from disk. |
| oddsRatio | Odds Ratio for Multiple Contigency Tables |
| pairwiseContingTables | Contingency Tables |
| pairwiseIntersects | All Pairwise Intersections Between Two Libraries Quickly... |
| pairwiseSetOverlap | All Pairwise Comparisons Between Gene Sets of Two Libraries |
| removeDupes | Remove duplicate genes from gene set. |
| removeEmptySets | Remove empty gene sets from a library |
| removeLibWeights | Remove weights associated with gene set library. |
| removeSetWeights | Remove weights associated with a gene set. |
