pairwiseContingTables: Contingency Tables
In MaayanLab/genesetr: Manipulate, Test, and Visualize Gene Set Overlaps

Description Usage Arguments Value Examples

2x2 contingency tables

1	pairwiseContingTables(lib1, lib2, background = NULL)

`lib1`	A library of gene sets in List, LongDF or Mat format.
`lib2`	A library of gene sets in List, LongDF or Mat format.
`background`	The size of the universe of genes under consideration. User may set to a constant. Default is NULL which results in background being set to the size of the union of the unique genes of lib1 and lib2.

A data frame with the following fields:

a: x
b: x
c: x
d: x
background: x
len_set1: x
len_set2: x

...

#load example gene set libraries
data("encode_example","chea_example")
conting_tab = pairwiseContingTables(lib1, lib2,background= 30000)
conting_tab = pairwiseContingTables(lib1, lib2)