pairwiseIntersects: All Pairwise Intersections Between Two Libraries Quickly...

In MaayanLab/genesetr: Manipulate, Test, and Visualize Gene Set Overlaps

Description

All Pairwise Intersections Between Two Libraries Quickly computes the size of the intersection between all pairs of sets within a library.

Usage

pairwiseIntersects(lib1, lib2)

Arguments

lib1	A library of gene sets in List, LongDF or Mat format.
lib2	A library of gene sets in List, LongDF or Mat format.

Value

A matrix with lib1 gene set names along the rows and lib2 gene set names on the columns populated with the sizes of the intersections.

Examples

#load example gene set libraries
data("encode_example", "chea_example")
intersects = pairwiseIntersects(encode_example, chea_example)

MaayanLab/genesetr documentation built on Aug. 14, 2019, 12:20 p.m.